Bioinformatics.be

Bioinformatics II The Final Frontier

wvcrieki — Tue, 08 May 2012 11:52:55 +0000

Who: The Students Lecture: Bioinformatics When: Thursday 10rd may 16u-17:30 Where: Lokaal A1.057 Agenda: Presentation and status report in the different ongoing student projects. Keep the presentation basic and we will focus on the discussion and explore possibilities for next … Continue reading →

Guest Lecture III: Prof.dr.ir Tim De Meyer

admin — Wed, 02 May 2012 09:22:15 +0000

Who: Prof. dr.ir. Tim De Meyer
Lecture: Applied datamining for bioinformatics
When: 3rd may 9.00-11:30
Where: Lokaal A1.057

Bioinformatics2_LectureTDM

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Epigenetics avant-la-lettre

admin — Tue, 24 Apr 2012 13:24:42 +0000

Study of individual bacteria in various ways has established that a bacterial culture which is genetically homogeneous and grown in homogeneous nutrient conditions nevertheless produces characteristically different individuals. These individuals retain their properties throughout their life cycle, showing that the individuality is not a momentary effect of random chance bombardments by a fluctuating environment. Moreover, the individuality is not a function of position in the cell division cycle (Spudich & Koshland, Nature, 1976). Anno 2012, people looked at multicellulars. Epigenetics = Non-Genetic Individuality. We are all individuals !

Guest Lecture II by Dr.ir Bart Deplancke

admin — Tue, 24 Apr 2012 09:16:31 +0000

Who: Dr.ir. Bart Deplancke
Lecture: System Genetics
When: 26th april 9.00-11:30
Where: Lokaal A1.057

Human genetic variation and its contribution to complex traits

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Guest Lecture I by Dr.ir Maté Ongenaert

admin — Tue, 10 Apr 2012 09:05:25 +0000

Who: Dr.ir. Maté Ongenaert
Lecture: Text Mining: Bots & Spiders
When: 19th april 9.00-11:30
Where: Lokaal A1.057

Bots & spiders

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Perl Progress Bar

admin — Mon, 09 Apr 2012 13:12:03 +0000

sub progressbar {
	$a=$_[0];
	if($a<0) {
		for($s=0;$s<-$a/10000;$s++) {
			print " ";
		}
		print "                                \r";
	}
	if($a%10000==0) {
		$seq="";
		for($s=0;$s<$a/10000;$s++) {
			$seq.="►";
		}
		if(($a/10000)%2==0) { print "  ✖ Crunching ".$seq."\r"; }
		if(($a/10000)%2==1) { print "  ✚ Crunching ".$seq."\r"; }
	}

}

The Elements of Bioinformatics

admin — Wed, 04 Apr 2012 19:14:39 +0000

PHP Pokemon

admin — Thu, 22 Mar 2012 15:09:05 +0000


Pokemon Search

	




Zoek naar:






Which Pokemon:

 >



connect( 'dbi:mysql:mysql',
#                      'root',
#                        'mysql',
#                      ) || die "Database connection not made: $DBI::errstr";

$user = 'root';
$pass = 'biobix';
$host = 'localhost';
$db_name = 'biobix';

// Data Source Name: This is the universal connection string
$dsn = "mysql://$user:$pass@$host/$db_name";
require_once ('DB.php');

$db = DB::connect($dsn);

$sql_count = "select count(*) from pokemon where English_name like '".$_GET["pokemon"]."%';" ;

$sql = "select * from pokemon where English_name like '".$_GET["pokemon"]."%';" ;

echo $sql_count;

$result2 = $db->query($sql_count);

$result = $db->query($sql);

$result2->fetchInto($arr_count1,DB_FETCHMODE_ORDERED);
$aantal = $arr_count1[0];

$table = new HTML_Table (Array ("border" => "1", "width" => "95%", "align" => "center"));
$table->addRow(Array("Header1","Header2"));

while ($result->fetchInto($arr,DB_FETCHMODE_ORDERED))

{

$table->addRow(Array($arr[1],$arr[2]));

};

echo $arr_count1[0];

$table->setColAttributes(0,"align=center");
$table->setColAttributes(1,"align=center");

$row1Style = array("class" => "bg0");
$row2Style = array("class" => "bg1");

$table->setRowAttributes (0, "style = 'background-color: #EEEEEE; color: #000000'");
$table->altRowAttributes (1, $row1Style,$row2Style);

$table->display();

#if (PEAR::isError($db)) {
    //This is an example of what you can do when an error happens. You could also log the error or try to recover from it.
#    die($db->getMessage().' '.$db->getUserInfo());
#}

//DB::connect will return a Pear DB object on success
// or a Pear DB Error object on error
// You can also set to TRUE the second param
// if you want a persistent connection:
// $db = DB::connect($dsn, true);

//$db = DB::connect($dsn);
//$db->setfetchMode(DB_FETCHMODE_ASSOC);
//if (PEAR::isError($db)) {
    //This is an example of what you can do when an error happens. You could also log the error or try to recover from it.
//    die($db->getMessage().' '.$db->getUserInfo());
//}
//$db= OCILogon($user,$pass,$db_name);

// With DB::isError you can differentiate between an error or
// a valid connection.
#if (DB::isError($db)) {
//	//echo "hierro";
#	die ($db->getMessage());
#}
?>

Get Inspired

admin — Wed, 21 Mar 2012 11:33:22 +0000

DBI

admin — Thu, 08 Mar 2012 15:15:57 +0000


use DBI;

my $dbh = DBI->connect( 'dbi:mysql:biobix',
                        'root',
                        'biobix',
                      ) || die "Database connection not made: $DBI::errstr";

$sth = $dbh->prepare('SELECT * FROM pokemon');
$sth->execute();
while (my @row = $sth->fetchrow_array) {

print join(":",@row),"\n";
}
$sth->finish();

$dbh->disconnect();